COSGAP
latest
Table of Contents
Introduction
Getting started
Installation
Singularity
Specifications
Reference
Scripts
Usecases
API reference
Contributing
Changelog
Internal usage
COSGAP
Index
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Index
A
|
B
|
C
|
D
|
E
|
G
|
L
|
M
|
N
|
P
|
R
|
S
A
ActionAppendDeprecated (class in gwas)
ActionStoreDeprecated (class in gwas)
B
BasePGS (class in pgs.pgs)
C
convert_dict_to_str() (in module pgs.pgs)
D
default() (gwas.NumpyEncoder method)
df_colums_to_file() (in module pgs.pgs)
E
error() (gwas.Logger method)
G
generate_eigenvec_eigenval_files() (pgs.pgs.PGS_LDpred2 method)
get_model_evaluation_str() (pgs.pgs.PGS_LDpred2 method)
(pgs.pgs.PGS_Plink method)
(pgs.pgs.PGS_PRSice2 method)
get_str() (pgs.pgs.BasePGS method)
(pgs.pgs.PGS_LDpred2 method)
(pgs.pgs.PGS_Plink method)
(pgs.pgs.PGS_PRSice2 method)
(pgs.pgs.Standard_GWAS_QC method)
gwas
module
L
LoadFromFile (class in gwas)
log() (gwas.Logger method)
Logger (class in gwas)
M
module
gwas
pgs.pgs
N
NumpyEncoder (class in gwas)
P
pgs.pgs
module
PGS_LDpred2 (class in pgs.pgs)
PGS_Plink (class in pgs.pgs)
PGS_PRSice2 (class in pgs.pgs)
post_run_plink() (in module pgs.pgs)
post_run_prsice2() (in module pgs.pgs)
R
run_call() (in module pgs.pgs)
S
sec_to_str() (in module gwas)
set_env() (in module pgs.pgs)
Standard_GWAS_QC (class in pgs.pgs)
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